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Update metadata.md#247

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benjeffery merged 1 commit intotskit-dev:mainfrom
hyanwong:patch-47
Aug 3, 2023
Merged

Update metadata.md#247
benjeffery merged 1 commit intotskit-dev:mainfrom
hyanwong:patch-47

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@hyanwong hyanwong commented Jul 25, 2023

Add section references

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hyanwong commented Jul 25, 2023 •
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Failing with that scikit-allel error still: configuration error: `project` must contain ['name'] properties (#245)

Collecting scikit-allel==1.3.5
[630](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:631)
  Downloading scikit-allel-1.3.5.tar.gz (9.7 MB)
[631](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:632)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 9.7/9.7 MB 15.6 MB/s eta 0:00:00
[632](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:633)
  Installing build dependencies: started
[633](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:634)
  Installing build dependencies: finished with status 'done'
[634](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:635)
  Getting requirements to build wheel: started
[635](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:636)
  Getting requirements to build wheel: finished with status 'error'
[636](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:637)
  error: subprocess-exited-with-error
[637](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:638)
  
[638](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:639)
  × Getting requirements to build wheel did not run successfully.
[639](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:640)
  │ exit code: 1
[640](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:641)
  ╰─> [36 lines of output]
[641](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:642)
      [scikit-allel] setup extensions with cython
[642](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:643)
      Compiling allel/opt/model.pyx because it changed.
[643](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:644)
      Compiling allel/opt/stats.pyx because it changed.
[644](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:645)
      Compiling allel/opt/io_vcf_read.pyx because it changed.
[645](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:646)
      [1/3] Cythonizing allel/opt/io_vcf_read.pyx
[646](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:647)
      [2/3] Cythonizing allel/opt/model.pyx
[647](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:648)
      [3/3] Cythonizing allel/opt/stats.pyx
[648](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:649)
      Traceback (most recent call last):
[649](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:650)
        File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
[650](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:651)
          main()
[651](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:652)
        File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
[652](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:653)
          json_out['return_val'] = hook(**hook_input['kwargs'])
[653](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:654)
        File "/opt/hostedtoolcache/Python/3.10.12/x64/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 118, in get_requires_for_build_wheel
[654](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:655)
          return hook(config_settings)
[655](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:656)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 341, in get_requires_for_build_wheel
[656](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:657)
          return self._get_build_requires(config_settings, requirements=['wheel'])
[657](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:658)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 323, in _get_build_requires
[658](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:659)
          self.run_setup()
[659](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:660)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 338, in run_setup
[660](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:661)
          exec(code, locals())
[661](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:662)
        File "<string>", line 99, in <module>
[662](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:663)
        File "<string>", line 95, in setup_package
[663](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:664)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/__init__.py", line 107, in setup
[664](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:665)
          return distutils.core.setup(**attrs)
[665](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:666)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 159, in setup
[666](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:667)
          dist.parse_config_files()
[667](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:668)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 898, in parse_config_files
[668](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:669)
          pyprojecttoml.apply_configuration(self, filename, ignore_option_errors)
[669](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:670)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/config/pyprojecttoml.py", line 66, in apply_configuration
[670](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:671)
          config = read_configuration(filepath, True, ignore_option_errors, dist)
[671](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:672)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/config/pyprojecttoml.py", line 128, in read_configuration
[672](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:673)
          validate(subset, filepath)
[673](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:674)
        File "/tmp/pip-build-env-zzcabd_u/overlay/lib/python3.10/site-packages/setuptools/config/pyprojecttoml.py", line 55, in validate
[674](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:675)
          raise ValueError(f"{error}\n{summary}") from None
[675](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:676)
      ValueError: invalid pyproject.toml config: `project`.
[676](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:677)
      configuration error: `project` must contain ['name'] properties
[677](https://github.com/tskit-dev/tutorials/actions/runs/5658896585/job/15331225352?pr=247#step:5:678)
      [end of output]

benjeffery
benjeffery approved these changes Jul 26, 2023
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LGTM

@hyanwong
Update metadata.md
04c42d0 
Add section references
@benjeffery benjeffery merged commit 974c3da into tskit-dev:main Aug 3, 2023
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@hyanwong @benjeffery